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Commercial genotyping assays can only detect mutations that are present in at least 20% of the viral population. In this prospective study, researchers used a more-sensitive assay to determine the prevalence of transmitted drug resistance and then evaluated the effects of that resistance on treatment outcome.
Levels of drug resistance were determined in 61 treatment-naive patients, using both a commercial genotyping kit (ViroSeq) and a more-sensitive multiplex-primer-extension assay (HIV-SNaPshot). The HIV-SNaPshot assay is able to detect the presence of nine mutations (6 associated with NRTI resistance and 3 with NNRTI resistance) at levels as low as 2% of the viral population. Testing was performed both on plasma and on proviral DNA from p…