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RNA sequencing (RNA-seq) quantitates expressed transcripts, identifies novel transcripts, and detects gene-structure changes, including single-nucleotide polymorphisms, alternate splicing forms, and small insertions and deletions. Now, researchers have used this technology to investigate why some people with atopic dermatitis (AD) develop eczema herpeticum (ADEH). Individuals with ADEH are at risk for disseminated herpes simplex virus (HSV) infections, which can be fatal.
The researchers isolated peripheral blood mononuclear cells (PBMCs) from blood samples of 60 individuals aged 6 to 65 (20 with ADEH, 20 with AD but not ADEH, and 20 healthy controls without AD). The PBMCs were stimulated with HSV-1 for 21 hours before RNA isolation and sequ…