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The source of Clostridium difficile disease (CDI) in hospitals has not been resolved. In studies using whole gene sequencing (WGS), only about one third of hospital-acquired cases were genetically linked to a previous symptomatic hospital case. Confounding this issue is confusion about defining CDI. In the U.S., nucleic acid amplification tests (NAATs) alone are generally used to identify CDI in patients with diarrhea. However, increasingly, NAAT positivity is understood to indicate only carriage of the organism. To ascertain disease, a toxin assay on a stool sample, either by an enzyme immunoassay (EIA) or a cell cytotoxicity assay (CCA), is additionally required.
To assess the role of toxin-producing and nontoxigenic C. difficile on hospit…